When using R.E.D. Server Development, please cite the following set of 5 references:

        -1- R.E.D. Server:
E. Vanquelef, S. Simon, G. Marquant, E. Garcia, G. Klimerak, J. C. Delepine, P. Cieplak & F.-Y. Dupradeau, R.E.D. Server: a web service for deriving RESP and ESP charges and building force field libraries for new molecules and molecular fragments, Nucl. Acids Res. (Web server issue) 2011, 39, W511-W517, [DOI], [PMID], [PMCID].

        -2- The PyRED (or R.E.D. Python) program:
F. Wang, J.-P. Becker, P. Cieplak & F.-Y. Dupradeau, R.E.D. Python: Object oriented programming for Amber force fields, Université de Picardie - Jules Verne, Sanford Burnham Prebys Medical Discovery Institute, Nov. 2013

        -3- The R.E.D. tools:
F.-Y. Dupradeau, A. Pigache, T. Zaffran, C. Savineau, R. Lelong, N. Grivel, D. Lelong, W. Rosanski & P. Cieplak, The R.E.D. tools: Advances in RESP and ESP charge derivation and force field library building, Phys. Chem. Chem. Phys. 2010, 12, 7821-7839, [DOI], [PMID], [PMCID].

        -4- The updated version of the RESP program available here; original publication:
C. I. Bayly, P. Cieplak, W. Cornell & P. A. Kollman, A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: the RESP model, J. Phys. Chem., 1993, 97, 10269-10280, [DOI].

        -5- The Gaussian, GAMESS-US or Firefly program (i. e.the QM program you chose to interface with R.E.D. Server/R.E.D.).

Vanquelef et al., Nucl. Acids Res. (Web server issue) 2011, 39, W511-W517; cited by:
  2013
-38- Roman-Melendez et al. Biochemistry 2013, doi: 10.1021/bi4012644.
-37- Tse et al. J.Phys.Chem.C 2013, doi: 10.1021/jp409728a.
-36- Poulin et al. ChemBioChem 2013, doi: 10.1002/cbic.201300653.
-35- Lama et al. Sci.Rep. 2013, doi: 10.1038/srep03451.
-34- Profantova et al. J.Phys.Chem.B 2013, doi: 10.1021/jp4099864.
-33- Gawad LifeSci.J. 2013, issn: 1097-8135.
-32- Lee et al. J.Biol.Chem. 2013, doi: 10.1074/jbc.M113.526970.
-31- Kumar & Kishore J.Chem.Phys. 2013, doi: 10.1063/1.4821615.
-30- Polydorides & Simonson J.Comput.Chem. 2013, doi: 10.1002/jcc.23450.
-29- Andrews & Elcock J.Chem.TheoryComput. 2013, doi: 10.1021/ct400371h.
-28- Perkins et al. J.Phys.Chem.B 2013, doi: 10.1021/jp404619x.
-27- Sanders et al. J.Phys.Chem.B 2013, doi: 10.1021/jp4064966.
-26- Poorgholami-Bejarpasi & Sohrabi J.Mol.Model. 2013, doi: 10.1007/s00894-013-1948-z.
-25- Zhang et al. J.Am.Soc.MassSpect. 2013, doi: 10.1007/s13361-013-0712-z.
-24- Petrov et al. PLoSComput.Biol. 2013, doi: 10.1371/journal.pcbi.1003154.
-23- Pietra Chem.Biodiv. 2013, doi: 10.1002/cbdv.201300164.
-22- Oliveira et al. J.Mol.Graph.Model. 2013, doi: 10.1016/j.jmgm.2013.08.007.
-21- Zhu et al. J.Chem.TheoryComput. 2013, doi: 10.1021/ct400104x.
-20- Ahmed & Sandler J.Chem.TheoryComput. 2013, doi: 10.1021/ct3011002.
-19- Margreitter et al. Nucl.AcidsRes. 2013, doi: 10.1093/nar/gkt416.
-18- Kislenko et al. J.Phys.Chem.C 2013, doi: 10.1021/jp4023822.
-17- Stephenson et al. J.Am.Chem.Soc. 2013, doi: 10.1021/ja310820h.
-16- Sapay et al. MethodsMol.Biol. 2013, doi: 10.1007/978-1-62703-017-5_18.
-15- Stockner et al. PLoSComput.Biol. 2013, doi: 10.1371/journal.pcbi.1002909.
-14- Schlesier & Diezemann J.Phys.Chem.B 2013, doi: 10.1021/jp3115644.
-13- Carletti et al. Chem.Res.Toxicol. 2013, doi: 10.1021/tx3004505.
-12- Kumar & Kishore Biophys.Chem. 2013, doi: 10.1016/j.bpc.2012.11.004.
-11- Juncosa et al. Bioorg.Med.Chem. 2013, doi: 10.1016/j.bmc.2012.12.009.
  2012
-10- Tan et al. Angew.Chem.Int.Edit. 2012, doi: 10.1002/anie.201205676.
  -9- Guo et al. Chem.Commun. 2012, doi: 10.1039/C2CC36546D.
  -8- Pietra Chem.Biodiv. 2012, doi: 10.1002/cbdv.201200331.
  -7- Oliveira et al. J.Mol.Model. 2012, doi: 10.1007/s00894-012-1677-8.
  -6- Rouge et al. ChemPlusChem 2012, doi: 10.1002/cplu.201200141.
  -5- Abel et al. J.Chem.TheoryComput. 2012, doi: 10.1021/ct3003207.
  -4- Zhuang et al. Environ.Toxicol.Chem. 2012, doi: 10.1002/etc.1986.
  -3- Deng et al. J.Am.Chem.Soc. 2012, doi: 10.1021/ja305213z.
  -2- Shi & Pinto Carbohydr.Res. 2012, doi: 10.1016/j.carres.2012.05.024.
  -1- Kitova et al. Int.J.MassSpectrom. 2012, doi: 10.1016/j.ijms.2012.08.025.

See Scopus(26), Google Scholar(30), CrossRef(21) (and Click here), SciFinder(22) & Web of Science(21).

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