A user has to provide the different inputs of PyRED in a single archive file. See here for help for creating an archive file. An archive file is generally compressed allowing a fast upload of large files, or even of an entire PyRED job previously generated. The maximum size for an uploaded archive file is set to 90 MB at R.E.D. Server Development.

To be recognized by PyRED, the files in an archive file _must_ have the following names:
The PyRED program does NOT recognize input files, when provided to the Tripos mol2 file format!
Use instead the PDB file format for your molecule(s).

Six types of archive file are automatically recognized by R.E.D. Server Development:
The name and extension of the archive file do not matter: the filename of the uploaded archive is automatically renamed into "ArchiveFile".

The molecule(s) involved in a PyRED job corresponds to the Mol_red$n.pdb file(s) available in the uploaded archive file. The molecule order used in force field generation also corresponds to that defined in the archive file.

We regularly extend the process of recognition of the archive file and of the files available in this archive by R.E.D. Server Development/PyRED based on the problems encoutered by the users...

Last update of this web page: March 26th, 2019.

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